I'm kinda dealing with the same thing, here is a excerpt from a email I sent to Stratos today.
Sorry to have so many questions... I am curious, I have talked to several people and I keep hearing that my boat and motor should run in the lower to mid 60 mph range. When I first purchased the boat it ran 53 mph @ 5900 rpm running a 27 Shooter Prop, 16" of set back, that includes 12" built into the boat, 2" that the jack plate gives me in it's current configuration and 2" from the engine mount, and center line of the prop shaft 3" below the pad. I have had to replace the gear case and have recovered my speed basically. I now run 53 mph @ 5800 running a 24 Raker Prop 16" of set back and center line of prop shaft 3.75" below the pad. I was told recently that my jack plate was set up incorrectly, by a fellow Stratos owner. It's set up in a collapsed configuration not the normal way you see jack plates set up. I have also been told by a service technician that used to be with a Stratos dealer that the model year hull I have that was the way they were set up due to that fact that so much set back was built into the hull. Also that the rule of "thumb" is 1" of set back for every foot of hull length, with that rule I should have 20" of set back 4" less than what I have now. I have a couple of other props I want to try out but I would like to wait until I find out if I should reconfigure my jack plate before trying these different props. I'm looking for efficiency not necessarily speed, with one you get the other. So I am asking the builder of the boats their opinion. Should I change my jack plate configuration or leave it as is, looking for that 8 - 10 mph everyone says I'm missing. I included this pic so you could see what I mean by collapsed configuration.
Thank you in advance for all your help.